Basic Information
Locus ID:
SOLCI000141900
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold10469 | 4986 | 8043 | + | SOLCI000141900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 28,963.19 Da | 41.77 | 86.41 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 61 | 105 | 1.59398E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 61 | 109 | 2.6E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 116 | 9.98E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 117 | 3.3E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 63 | 103 | 3.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 63 | 104 | 12.858103 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 78 | 87 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004248721.1 | RING finger protein 5 isoform X1 [Solanum lycopersicum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2AN05 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_000595 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology