Basic Information
Locus ID:
SOLCI000103300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1032 | 56369 | 56934 | + | SOLCI000103300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 17,977.32 Da | 70.93 | 45.17 | -1.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 47 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004249817.1 | probable E3 ubiquitin-protein ligase ZFP1 [Solanum lycopersicum] | 0 |
| TrEMBL | A0A6N2C772 | GATA zinc finger domain-containing protein 14-like (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_000442 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Solanum chilense | 1 | SOLCI000103300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001653, gene-LOC107001654 |