Basic Information
Locus ID:
SOLCI000095800
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1029 | 55498 | 59117 | - | SOLCI000095800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 38,011.82 Da | 32.96 | 72.50 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 68 | 2.2E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 81 | 2.71E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 2.7E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 2.2E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.298236 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 364 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_004242134.1 | binding partner of ACD11 1-like [Solanum lycopersicum] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2C6P9 | RRM domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_000419 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology