Basic Information
Locus ID:
SOLCI000078400
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1022 | 189663 | 192794 | + | SOLCI000078400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 69,803.34 Da | 45.65 | 88.22 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 19 | 122 | 5.22827E-49 | - |
| Pfam | PF03000 | NPH3 family | 213 | 478 | 1.5E-96 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 113 | 3.2E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 17 | 114 | 2.59E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 13 | 133 | 2.3E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 125 | 0.006 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 213 | 502 | 94.239838 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 97 | 10.716321 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 629 | - | - |
| Coils | Coil | Coil | 550 | 577 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_015066604.1 | BTB/POZ domain-containing protein At1g30440 [Solanum pennellii] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2C4Y6 | NPH3 domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_000342 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology