Basic Information
Locus ID:
SOLCI000066500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1019 | 34508 | 35446 | - | SOLCI000066500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 36,694.45 Da | 46.48 | 87.44 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 255 | 297 | 1.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 240 | 302 | 1.35E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 214 | 303 | 9.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 256 | 296 | 5.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 256 | 297 | 12.828597 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016579545.2 | RING-H2 finger protein ATL7 [Capsicum annuum] | 0 |
| Q8GT75 | NEP1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=NIP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6N2C2L0 | RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_000297 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 2 | gene-LOC132624661, gene-LOC132624662 |
| Solanaceae | Solanum chilense | 1 | SOLCI000066500 |