Basic Information
Locus ID:
SOLCI000047500
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
DNA (cytosine-5)-methyltransferase CMT3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1011 | 44730 | 51135 | + | SOLCI000047500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 104,546.98 Da | 38.56 | 74.21 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 221 | 341 | 1.34772E-59 | - |
| CDD | cd18635 | CD_CMT3_like | 484 | 540 | 2.46193E-29 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 485 | 539 | 4.8E-11 | IPR023780 |
| Pfam | PF01426 | BAH domain | 224 | 330 | 6.1E-9 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 550 | 899 | 4.4E-34 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 478 | 539 | 1.65E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 371 | 900 | 3.55E-77 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 161 | 326 | 4.3E-48 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 480 | 917 | 8.7E-223 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 356 | 456 | 3.2E-13 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 703 | 866 | 8.7E-223 | - |
| SMART | SM00298 | chromo_7 | 484 | 543 | 9.7E-8 | IPR000953 |
| SMART | SM00439 | BAH_4 | 222 | 341 | 7.2E-11 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 485 | 538 | 13.933101 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 222 | 341 | 16.386791 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 370 | 907 | 45.622383 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 508 | 528 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 555 | 567 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 644 | 657 | 6.7E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 371 | 387 | 6.7E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 598 | 612 | 6.7E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 74 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | NP_001353596.1 | DNA (cytosine-5)-methyltransferase CMT2 [Solanum lycopersicum] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6N2C536 | DNA (cytosine-5-)-methyltransferase OS=Solanum chilense OX=4083 GN=EJD97_000250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology