Basic Information
Locus ID:
SOLCI000020600
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1002 | 6678 | 12448 | + | SOLCI000020600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 43,171.39 Da | 61.25 | 69.87 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 330 | 370 | 1.75577E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 329 | 375 | 4.8E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 376 | 2.59E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 313 | 380 | 2.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 331 | 369 | 0.0021 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 331 | 370 | 11.751628 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049351576.1 | probable E3 ubiquitin-protein ligase LUL4 isoform X2 [Solanum verrucosum] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C7N8 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_000141 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology