Basic Information
Locus ID:
SOLCI000016000
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Description:
Hippocampus abundant
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1000 | 76249 | 80429 | - | SOLCI000016000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 47,265.02 Da | 38.80 | 110.09 | 0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 10 | 410 | 2.33144E-47 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 10 | 370 | 6.1E-23 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 9 | 406 | 9.02E-33 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 6 | 408 | 1.4E-38 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 6 | 420 | 11.526367 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 319 | 339 | 1.0E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 50 | 69 | 1.0E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 354 | 377 | 1.0E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 111 | 132 | 1.0E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 294 | 315 | 1.0E-5 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_015069354.1 | hippocampus abundant transcript-like protein 1 [Solanum pennellii] | 0 |
| A4IF94 | Hippocampus abundant transcript-like protein 1 OS=Bos taurus OX=9913 GN=MFSD14B PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C2T6 | MFS domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_000118 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology