Basic Information
Locus ID:
SOLCI000003300
Species & Taxonomic ID:
Solanum chilense & 4083
Genome Assembly:
GCA_006013705.1
Short Name:
ARP2
Description:
Belongs to the actin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold1 | 264739 | 272687 | - | SOLCI000003300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 44,226.53 Da | 37.48 | 91.62 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 7 | 182 | 2.82594E-14 | - |
| Pfam | PF00022 | Actin | 2 | 383 | 1.6E-99 | IPR004000 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 147 | 383 | 8.19E-71 | IPR043129 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 2 | 154 | 8.64E-51 | IPR043129 |
| Gene3D | G3DSA:3.30.420.40 | - | 7 | 379 | 5.5E-136 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 139 | 350 | 5.5E-136 | - |
| Gene3D | G3DSA:3.90.640.10 | Actin; Chain A, domain 4 | 181 | 272 | 5.5E-136 | - |
| SMART | SM00268 | actin_3 | 4 | 387 | 5.0E-194 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 50 | 61 | 2.9E-29 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 116 | 129 | 2.9E-29 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 62 | 84 | 2.9E-29 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 25 | 34 | 2.9E-29 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 141 | 160 | 2.9E-29 | IPR004000 |
| PRINTS | PR00190 | Actin signature | 237 | 253 | 2.9E-29 | IPR004000 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27000.1 | actin related protein 2. encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. its transcript level is down regulated by light and is expressed in very low levels in all organs examined. | 0 |
| RefSeq | XP_015067122.1 | actin-related protein 2 isoform X1 [Solanum pennellii] | 0 |
| Q9LSD6 | Actin-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=ARP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CE01 | Actin-related protein 2 OS=Solanum chilense OX=4083 GN=EJD97_000027 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17666 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25012 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026902 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13650, Sbi_jg52252 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9596 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00024798, GOSA_00025983 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33442, Sgl38809 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000584, gene:ENSEOMG00000003242 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0020510, CQ.Regalona.r1.6BG0021590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025070 |
| Apiaceae | Apium graveolens | 1 | Ag7G01365 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G005270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698014 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1156.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G25176 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G27000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004377m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g067200.2N, BniB07g035720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0085 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0089 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04430 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6909 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.108 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024304 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15147 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1337, BH04.1331, CH04.1512 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383050, gene-QOZ80_5BG0429920 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0336970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067052 |
| Poaceae | Oryza coarctata | 2 | Oco15G007130, Oco16G006910 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g28190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G143900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102971 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G006690, Chr17G006090 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G587900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG053130, gene_TRIDC3BG059770 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G369400.1, TraesCS3B02G401300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb331340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36466 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17953, Zma_g17976 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2318, evm.TU.LG17.1368 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g09080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.805 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28717 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5761 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12409 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.71 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008652 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14490, nbisL1-mrna-883 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1611, nbisL1-mrna-8466, nbisL1-mrna-8467 |
| Salicaceae | Populus euphratica | 1 | populus_peu01269 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621200 |
| Solanaceae | Solanum chilense | 1 | SOLCI000003300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011945 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21266_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1075 |
| Zosteraceae | Zostera marina | 3 | Zosma04g21700.v3.1, Zosma04g21730.v3.1, Zosma05g01330.v3.1 |