Basic Information
Locus ID:
Pt_Ctg00391
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ContigUN | 12872232 | 12872720 | + | Pt_Ctg00391 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 17,460.84 Da | 72.31 | 82.04 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 94 | 137 | 9.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 94 | 143 | 2.29E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 142 | 4.9E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 94 | 137 | 2.5E-4 | IPR011016 |
| SMART | SM00184 | ring_2 | 95 | 136 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 95 | 137 | 13.153163 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 72 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 0 |
| RefSeq | XP_047072244.1 | probable E3 ubiquitin-protein ligase XERICO [Lolium rigidum] | 0 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DAY2 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_037186 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology