Basic Information
Locus ID:
Pt_Ctg00289
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ContigUN | 10992949 | 10995044 | + | Pt_Ctg00289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 53,831.00 Da | 41.71 | 71.11 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13519 | von Willebrand factor type A domain | 219 | 307 | 9.2E-10 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 375 | 420 | 4.3E-10 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 213 | 306 | 8.6E-14 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 218 | 322 | 2.8E-15 | IPR036465 |
| SMART | SM00327 | VWA_4 | 216 | 393 | 8.2E-4 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 218 | 289 | 8.984909 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 4 | 40 | 8.874793 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 478 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54780.2 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_051230204.1 | E3 ubiquitin-protein ligase WAV3-like [Lolium perenne] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A077S6A8 | VWFA domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF056300040CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_071424 |
| Poaceae | Puccinellia tenuiflora | 9 | Pt_Chr0100096, Pt_Chr0100209, Pt_Chr0100707, Pt_Chr0100708 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G624400 |