Basic Information
Locus ID:
Pt_Chr0705494
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 163354847 | 163360204 | + | Pt_Chr0705494 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 66,268.59 Da | 51.97 | 87.63 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 262 | 554 | 3.69226E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 297 | 9.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 342 | 0.0074 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 554 | 6.5E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 511 | 0.0048 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 256 | 554 | 1.97E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 252 | 555 | 4.1E-70 | IPR015943 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 0.06 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 555 | 2.6E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 6.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 426 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 470 | 512 | 1.0 | IPR001680 |
| SMART | SM00668 | ctlh | 93 | 150 | 3.4E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 428 | 466 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 2.6E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 299 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 351 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 522 | 564 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 60 | 92 | 8.664682 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 347 | 11.365591 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 93 | 150 | 10.804138 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 522 | 557 | 12.130133 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 596 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_020201155.1 | WD repeat-containing protein 26 homolog [Aegilops tauschii subsp. strangulata] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453JW57 | WD repeat-containing protein 26-like OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology