Basic Information
Locus ID:
Pt_Chr0705446
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 162252928 | 162256421 | + | Pt_Chr0705446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 23,289.66 Da | 58.67 | 65.97 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 165 | 207 | 4.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 211 | 1.37E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 215 | 3.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 206 | 5.2E-6 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 162 | 214 | 0.0058 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 207 | 12.459772 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17905.1 | RING/U-box superfamily protein. Putative RING-H2 finger protein ATL4H. | 0 |
| RefSeq | XP_047048849.1 | probable E3 ubiquitin-protein ligase RHY1A [Lolium rigidum] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A453JVD1 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.3909, BH05.3935, CH05.4152 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0395530, gene-QOZ80_5BG0443860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0439510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001362 |
| Poaceae | Oryza coarctata | 2 | Oco23G009380, Oco24G008940 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g39110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G118900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705446, Pt_Chr0705460 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G018460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G148900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG010980, gene_TRIDC5BG012780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G072600.1, TraesCS5B02G078400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30421 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26027 |