Basic Information
Locus ID:
Pt_Chr0705324
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 157903749 | 157904288 | + | Pt_Chr0705324 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 19,786.60 Da | 38.41 | 84.58 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 21 | 63 | 5.25223E-17 | - |
| Pfam | PF04564 | U-box domain | 18 | 86 | 1.2E-10 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 85 | 2.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 97 | 8.4E-19 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 20 | 83 | 1.3E-16 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 16 | 90 | 16.950127 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49810.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_003558442.1 | U-box domain-containing protein 75 [Brachypodium distachyon] | 0 |
| Q10PI9 | U-box domain-containing protein 75 OS=Oryza sativa subsp. japonica OX=39947 GN=TUD1 PE=1 SV=1 | 0 | |
| TrEMBL | I1H7U5 | RING-type E3 ubiquitin transferase OS=Brachypodium distachyon OX=15368 GN=100842685 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701940, Pt_Chr0705324 |