Basic Information
Locus ID:
Pt_Chr0705183
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 153538225 | 153544283 | - | Pt_Chr0705183 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 101,930.66 Da | 37.39 | 91.10 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 606 | 872 | 7.07213E-91 | - |
| Pfam | PF00069 | Protein kinase domain | 603 | 814 | 1.8E-43 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 456 | 496 | 6.0E-7 | IPR001611 |
| Pfam | PF12819 | Malectin-like domain | 31 | 363 | 6.3E-82 | IPR024788 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 581 | 869 | 1.62E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 400 | 508 | 6.8E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 676 | 894 | 3.4E-58 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 189 | 366 | 1.4E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 577 | 675 | 5.9E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 377 | 532 | 6.0E-32 | IPR032675 |
| SMART | SM00220 | serkin_6 | 600 | 875 | 2.4E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 600 | 875 | 38.025421 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 606 | 628 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 722 | 734 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 886 | 906 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 887 | 906 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37050.3 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_051186251.1 | probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Lolium perenne] | 0 |
| C0LGI2 | Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana OX=3702 GN=At1g67720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6MPL7 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg14926, jg14927, jg3438, jg34561, jg9544 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14190, gene_18050 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013817, Ah030209 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g147660 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg27599, Sbi_jg32919, Sbi_jg42752, Sbi_jg42753 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11238, Seu_jg7703 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002557, GOSA_00012142 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35118, Sgl40497, Sgl71563, Sgl75139 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000003146, gene:ENSEOMG00000006876 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.6AG0003710, CQ.Regalona.r1.6BG0003730 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30227840, pistato.v30271900 |
| Apiaceae | Apium graveolens | 2 | Ag10G01923, Ag8G02252 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G002830, COCNU_04G014550, scaffold011903G000020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702853, gene-LOC103708996, gene-LOC103711613 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.225.V1.1, AsparagusV1_09.204.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G17450, Ftri13G27942, Ftri17G31209 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67720.1, AT2G37050.3 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016198m.g.v1.0, Thhalv10018088m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g19360.v2.2, Sp5g22730.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g044970.2N, BniB06g007390.2N, BniB08g023470.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G1300, Ceq08G1277 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1373, Cgl08G1305 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g15830 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g01840 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1376, evm.TU.LG03.690 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003248, Pov_00003307 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30675 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.4671, AH04.15, AH05.92, BH02.4739, BH04.23, CH04.21 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0048410, gene-QOZ80_1BG0098350 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0330950.1, HORVU.MOREX.r3.5HG0466820.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_000204, gene-QYE76_003817, gene-QYE76_007989 ... |
| Poaceae | Oryza coarctata | 10 | Oco01G031390, Oco02G032500, Oco04G023990 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os11g01200.1, LOC_Os12g01200.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G420800, gene-BS78_05G001700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102993, Pt_Chr0601055, Pt_Chr0705183 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr03G023980, Chr04G020660, Chr07G022530, Chr08G017460 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G730200, Tel3E01G914300, Tel5E01G270100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG076020, gene_TRIDC3BG087740 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G538300.1, TraesCS3B02G603800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb139660_P001, Zm00001eb194930_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28044 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12028, Zma_g18310 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG13.109, evm.TU.LG16.1034, evm.TU.LG20.1448 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g35900 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.60444.13, evm.TU.Scaffold_15_RagTag.825 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-23180, nbisL1-mrna-27013, nbisL1-mrna-27200 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-17451, nbisL1-mrna-19218, nbisL1-mrna-9292 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-14688, nbisL1-mrna-15577, nbisL1-mrna-3874 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000001l.453, evm.TU.utg000013l.109 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002580, Maker00006407, Maker00016558 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11206, nbisL1-mrna-5087, nbisL1-mrna-7019 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15939, nbisL1-mrna-17696, nbisL1-mrna-489 |
| Salicaceae | Populus euphratica | 5 | populus_peu07667, populus_peu11741, populus_peu11749 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630109, gene-LOC132641213 |
| Solanaceae | Solanum chilense | 2 | SOLCI005605700, SOLCI006905700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020726, gene-LOC107031477 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_2732, gene_6772 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G1849, TC07G0633, TC11G0383 |
| Zosteraceae | Zostera marina | 2 | Zosma01g18710.v3.1, Zosma01g18720.v3.1 |