Basic Information
Locus ID:
Pt_Chr0705116
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 151364278 | 151376168 | + | Pt_Chr0705116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 94,906.25 Da | 50.76 | 83.01 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 39 | 66 | 0.0021 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 461 | 494 | 3.27E-6 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 66 | 1.83E-6 | IPR036047 |
| SUPERFAMILY | SSF101898 | NHL repeat | 149 | 396 | 7.32E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 459 | 496 | 5.9E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 34 | 72 | 3.5E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047046701.1 | uncharacterized protein LOC124651702 [Lolium rigidum] | 0 |
| TrEMBL | A0A0E0EPY0 | F-box domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH03.1369, AH03.1375, BH03.1480, BH03.1481, BH03.1484 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5BG0424490, gene-QOZ80_6AG0522300 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.5HG0470290.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_004102, gene-QYE76_004104, gene-QYE76_004105 ... |
| Poaceae | Oryza coarctata | 1 | Oco17G001030 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g08550.1, LOC_Os09g08620.1 |
| Poaceae | Puccinellia tenuiflora | 9 | Pt_Chr0204762, Pt_Chr0204764, Pt_Chr0204765, Pt_Chr0204769 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G003490, Chr11G015420, Chr11G015430, Chr11G015440 |
| Poaceae | Thinopyrum elongatum | 6 | Tel5E01G263400, Tel5E01G289600, Tel5E01G289900 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC5AG025450, gene_TRIDC5AG027990 ... |
| Poaceae | Triticum aestivum | 17 | TraesCS3D02G377000.1.cds1, TraesCS5A02G152500.1.cds1 ... |