Basic Information
Locus ID:
Pt_Chr0705098
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 150784448 | 150787238 | + | Pt_Chr0705098 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 70,809.00 Da | 49.10 | 90.12 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 337 | 608 | 9.78284E-97 | - |
| Pfam | PF00139 | Legume lectin domain | 29 | 229 | 2.9E-8 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 336 | 590 | 1.1E-47 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 315 | 628 | 2.56E-78 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 26 | 231 | 3.67E-17 | IPR013320 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 294 | 406 | 2.2E-28 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 26 | 228 | 3.6E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 407 | 613 | 1.2E-60 | - |
| SMART | SM00220 | serkin_6 | 331 | 614 | 6.0E-38 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 331 | 622 | 37.50246 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 455 | 467 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 337 | 360 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55830.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_044946710.1 | probable L-type lectin-domain containing receptor kinase S.7 [Hordeum vulgare subsp. vulgare] | 0 |
| Q9FHG4 | Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana OX=3702 GN=LECRKS7 PE=2 SV=1 | 0 | |
| TrEMBL | F2DM09 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0469840.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004134, gene-QYE76_004163 |
| Poaceae | Oryza coarctata | 1 | Oco18G000930 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g07730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G079500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705076, Pt_Chr0705098 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G003770, Chr11G015160 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G286600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG027700, gene_TRIDC5BG029160 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G168800.1.cds1, TraesCS5B02G165600.1.cds1 ... |