Basic Information
Locus ID:
Pt_Chr0705062
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Fasciclin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 149892163 | 149894181 | + | Pt_Chr0705062 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 42,416.74 Da | 38.96 | 95.73 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 42 | 137 | 1.2E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 204 | 335 | 1.3E-13 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 198 | 335 | 3.01E-17 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 37 | 155 | 1.03E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 200 | 335 | 6.9E-11 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 31 | 170 | 2.8E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 230 | 336 | 4.7E-12 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 31 | 178 | 11.369278 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 191 | 333 | 11.231556 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 379 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_047046372.1 | fasciclin-like arabinogalactan protein 2 [Lolium rigidum] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LKG2 | Fasciclin-like arabinogalactan protein 2 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology