Basic Information
Locus ID:
Pt_Chr0704898
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein dimerization activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 143321221 | 143327385 | - | Pt_Chr0704898 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 92,581.56 Da | 47.79 | 82.50 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 670 | 794 | 2.7E-19 | IPR003441 |
| Pfam | PF00646 | F-box domain | 22 | 61 | 2.5E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 81 | 4.06E-11 | IPR036047 |
| SUPERFAMILY | SSF101941 | NAC domain | 671 | 810 | 3.92E-31 | IPR036093 |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 72 | 4.5E-5 | - |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 672 | 813 | 1.2E-27 | IPR036093 |
| SMART | SM00256 | fbox_2 | 26 | 67 | 0.0062 | IPR001810 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 663 | 810 | 30.09314 | IPR003441 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 20 | 70 | 10.027357 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 815 | 840 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46590.1 | NAC domain containing protein 96. | 0 |
| RefSeq | XP_051184844.1 | uncharacterized protein LOC127299022 isoform X2 [Lolium perenne] | 0 |
| Q9LS24 | NAC domain-containing protein 96 OS=Arabidopsis thaliana OX=3702 GN=NAC096 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MX33 | F-box domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH02.1933, CH02.1946 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_4BG0352940, gene-QOZ80_6AG0533510 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_008233, gene-QYE76_008236, gene-QYE76_008837 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G010670, Oco01G011070 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g28520.1, LOC_Os01g32640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G371000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0500709, Pt_Chr0704898 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G000930, Chr25G013870, Chr25G013880, Chr27G016500 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G069100, Tel1E01G099600, Tel1E01G744700 |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G439200.1, TraesCS1B02G055300.1 ... |