Basic Information
Locus ID:
Pt_Chr0704865
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 142925748 | 142927414 | + | Pt_Chr0704865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 58,714.15 Da | 39.56 | 82.63 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 312 | 435 | 1.9158E-17 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 193 | 303 | 4.4E-27 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 463 | 527 | 2.5E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 183 | 302 | 4.71E-30 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 311 | 438 | 1.37E-19 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 452 | 527 | 1.49E-8 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 182 | 305 | 3.2E-34 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 439 | 529 | 1.3E-11 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 309 | 438 | 7.6E-16 | IPR008974 |
| SMART | SM00225 | BTB_4 | 201 | 304 | 1.3E-23 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 310 | 440 | 15.046916 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 473 | 529 | 9.620175 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 201 | 268 | 18.410025 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.2 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_047050603.1 | BTB/POZ and MATH domain-containing protein 3-like [Lolium rigidum] | 0 |
| Q6IQ16 | Speckle-type POZ protein-like OS=Homo sapiens OX=9606 GN=SPOPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6N0Q2 | Speckle-type POZ protein-like protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0712650 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0219660.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_000351, gene-QYE76_018036, gene-QYE76_020460 ... |
| Poaceae | Puccinellia tenuiflora | 8 | Pt_Chr0100491, Pt_Chr0106602, Pt_Chr0206622, Pt_Chr0206755 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G840100 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG009110, gene_TRIDC3AG071980 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G009700.1.cds1, TraesCS3A02G076600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb418740_P001 |