Basic Information
Locus ID:
Pt_Chr0704726
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 139393661 | 139395772 | - | Pt_Chr0704726 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 30,861.34 Da | 49.49 | 68.45 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 74 | 118 | 7.87995E-31 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 75 | 121 | 1.8E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 71 | 129 | 1.89E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 130 | 6.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 76 | 116 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 76 | 117 | 13.344952 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 91 | 100 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 164 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047046962.1 | E3 ubiquitin-protein ligase RNF5-like [Lolium rigidum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | F2CU97 | RING-type E3 ubiquitin transferase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology