Basic Information
Locus ID:
Pt_Chr0704678
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 137873452 | 137873673 | + | Pt_Chr0704678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.25 | 7,942.82 Da | 31.33 | 65.48 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 2 | 72 | 6.28E-16 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 1 | 72 | 5.7E-12 | IPR037176 |
| SMART | SM00205 | tha2 | 1 | 72 | 0.0096 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 1 | 73 | 12.970717 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 62 | 71 | 3.1E-8 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 11 | 27 | 3.1E-8 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75800.1 | Pathogenesis-related thaumatin superfamily protein. | 0 |
| RefSeq | XP_040385590.1 | thaumatin-like protein [Oryza brachyantha] | 0 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6K9J7 | Thaumatin-like protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology