Basic Information
Locus ID:
Pt_Chr0704572
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 135348051 | 135356198 | + | Pt_Chr0704572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 96,230.08 Da | 45.87 | 74.31 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 348 | 848 | 2.6E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 345 | 851 | 3.53E-67 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 796 | 864 | 5.3E-15 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 334 | 552 | 7.5E-56 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 347 | 851 | 31.419891 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 348 | 363 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 47 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_051184348.1 | ubiquitin carboxyl-terminal hydrolase 8-like [Lolium perenne] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6K9S2 | Ubiquitin carboxyl-terminal hydrolase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology