Basic Information
Locus ID:
Pt_Chr0704476
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Calcium-binding EGF-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 132820682 | 132826560 | + | Pt_Chr0704476 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 58,389.32 Da | 32.97 | 85.69 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 182 | 220 | 2.85897E-5 | - |
| Pfam | PF00069 | Protein kinase domain | 310 | 513 | 6.8E-37 | IPR000719 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 132 | 232 | 6.12E-9 | IPR009030 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 292 | 514 | 2.56E-61 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 386 | 521 | 9.2E-31 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 133 | 184 | 4.6E-5 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 185 | 232 | 1.9E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 284 | 385 | 2.2E-28 | - |
| SMART | SM00181 | egf_5 | 132 | 181 | 35.0 | IPR000742 |
| SMART | SM00179 | egfca_6 | 182 | 231 | 5.0E-7 | IPR001881 |
| SMART | SM00220 | serkin_6 | 310 | 522 | 1.0E-18 | IPR000719 |
| SMART | SM00181 | egf_5 | 185 | 231 | 1.7 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 310 | 522 | 32.18808 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 428 | 440 | - | IPR008271 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 182 | 215 | - | IPR018097 |
| Coils | Coil | Coil | 497 | 517 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21270.1 | wall-associated kinase 2. cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. | 0 |
| RefSeq | XP_047050416.1 | wall-associated receptor kinase 2-like [Lolium rigidum] | 0 |
| Q9LMP1 | Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6MLQ7 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology