Basic Information
Locus ID:
Pt_Chr0704437
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 131299301 | 131303171 | - | Pt_Chr0704437 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 56,069.73 Da | 45.71 | 88.25 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 126 | 2.72084E-47 | - |
| Pfam | PF00651 | BTB/POZ domain | 28 | 114 | 1.4E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 212 | 319 | 1.2E-23 | IPR027356 |
| Pfam | PF03000 | NPH3 family | 314 | 342 | 4.5E-8 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 17 | 114 | 5.65E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 136 | 8.4E-14 | IPR011333 |
| SMART | SM00225 | BTB_4 | 29 | 127 | 1.2E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 212 | 311 | 13.383997 | IPR027356 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 312 | 366 | 19.706673 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 12.164062 | IPR000210 |
| Coils | Coil | Coil | 415 | 442 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_051184456.1 | BTB/POZ domain-containing protein At1g30440-like [Lolium perenne] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6KA48 | BTB/POZ domain-containing protein At1g30440 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology