Basic Information
Locus ID:
Pt_Chr0704377
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 129395269 | 129398413 | - | Pt_Chr0704377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 61,158.09 Da | 59.49 | 70.86 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 207 | 270 | 1.1E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 342 | 6.59E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 207 | 277 | 2.7E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 217 | 6.77E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 216 | 1.3E-14 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 266 | 511 | 1.9E-51 | - |
| SMART | SM00647 | ibrneu5 | 278 | 335 | 0.16 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 206 | 270 | 1.0E-17 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 185 | 9.641949 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 131 | 339 | 38.610535 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 447 | 467 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34370.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047087731.1 | probable E3 ubiquitin-protein ligase ARI1 [Lolium rigidum] | 0 |
| Q949V6 | Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana OX=3702 GN=ARI1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6JF51 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0341130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062978 |
| Poaceae | Oryza coarctata | 1 | Oco06G019190 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101864, Pt_Chr0104424, Pt_Chr0704377, Pt_Ctg00135 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G052000, Tel4E01G113900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038460, gene_TRIDC4AG038470 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G244200.1, TraesCS4B02G070800.1 ... |