Basic Information
Locus ID:
Pt_Chr0704300
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 126892847 | 126895813 | - | Pt_Chr0704300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 27,803.47 Da | 53.76 | 69.89 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 10 | 251 | 1.9E-84 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 139 | 241 | 1.67E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 138 | 254 | 3.8E-45 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 143 | 242 | 24.819052 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_047047979.1 | auxin-responsive protein IAA30-like [Lolium rigidum] | 0 |
| P0C132 | Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1 | 0 | |
| TrEMBL | F2CPU9 | Auxin-responsive protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology