Basic Information
Locus ID:
Pt_Chr0704264
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 125909958 | 125914512 | + | Pt_Chr0704264 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 40,072.78 Da | 33.54 | 89.86 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 125 | 208 | 3.8E-9 | IPR020683 |
| Pfam | PF00515 | Tetratricopeptide repeat | 314 | 345 | 7.8E-7 | IPR001440 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 27 | 115 | 1.6E-17 | IPR020683 |
| SUPERFAMILY | SSF48452 | TPR-like | 245 | 357 | 3.59E-30 | IPR011990 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 207 | 2.36E-52 | IPR036770 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 243 | 358 | 4.2E-27 | IPR011990 |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 112 | 4.1E-29 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 113 | 211 | 1.9E-26 | IPR036770 |
| SMART | SM00248 | ANK_2a | 22 | 51 | 0.0017 | IPR002110 |
| SMART | SM00248 | ANK_2a | 186 | 215 | 520.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 55 | 86 | 0.0032 | IPR002110 |
| SMART | SM00248 | ANK_2a | 120 | 149 | 0.0014 | IPR002110 |
| SMART | SM00028 | tpr_5 | 313 | 346 | 4.9E-5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 245 | 278 | 90.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 279 | 312 | 130.0 | IPR019734 |
| SMART | SM00248 | ANK_2a | 87 | 116 | 0.0063 | IPR002110 |
| SMART | SM00248 | ANK_2a | 153 | 182 | 0.0092 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 22 | 54 | 10.39236 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 55 | 86 | 12.381428 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 22 | 48 | 9.940542 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 153 | 184 | 10.205854 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 55 | 87 | 13.67769 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 87 | 113 | 11.267111 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 153 | 185 | 11.5676 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 120 | 152 | 9.323959 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 87 | 119 | 11.91483 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 120 | 149 | 8.667035 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 313 | 346 | 11.505401 | IPR019734 |
| PRINTS | PR01415 | Ankyrin repeat signature | 56 | 71 | 2.5E-8 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 136 | 150 | 2.5E-8 | IPR002110 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04710.1 | ankyrin repeat family protein. | 0 |
| RefSeq | XP_037439484.1 | putative ankyrin repeat protein RF_0381 isoform X1 [Triticum dicoccoides] | 0 |
| Q8BW49 | Tetratricopeptide repeat protein 12 OS=Mus musculus OX=10090 GN=Ttc12 PE=1 SV=1 | 0 | |
| TrEMBL | M7ZAG1 | Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Triticum urartu OX=4572 GN=TRIUR3_31069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1475, jg35382 |
| Aizoaceae | Mesembryanthemum crystallinum | 7 | gene_10113, gene_18415, gene_19340, gene_19341, gene_19342 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah000253, Ah000255, Ah006237, Ah015373, Ah026151, Ah037550 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_4g083870, BVRB_5g120420, BVRB_6g137150 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg16765, Sbi_jg31543, Sbi_jg57757, Sbi_jg57758 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg22992, Seu_jg25400, Seu_jg3587, Seu_jg3588 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00008163, GOSA_00019498, GOSA_00019499 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24903, Sgl30049, Sgl54319, Sgl59664 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006664, gene:ENSEOMG00000011535 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.4AG0011120, CQ.Regalona.r1.4BG0011370 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30184200 |
| Apiaceae | Apium graveolens | 1 | Ag6G01928 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G002080 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103716575, gene-LOC113461912, gene-LOC120105337 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2016.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G34029 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G04710.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020698m.g.v1.0, Thhalv10021827m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g03550.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g033370.2N, BniB07g062080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2394 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2516 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01410 |
| Dunaliellaceae | Dunaliella salina | 7 | Dusal.0011s00023.v1.0, Dusal.0052s00030.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g41130 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7871 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2245 |
| Plantaginaceae | Plantago ovata | 6 | Pov_00007891, Pov_00007892, Pov_00007894, Pov_00007897 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06950 |
| Poaceae | Echinochloa crus-galli | 69 | AH01.1043, AH01.1044, AH01.1045, AH01.1047, AH01.1236 ... |
| Poaceae | Eleusine coracana subsp. coracana | 34 | gene-QOZ80_2AG0114770, gene-QOZ80_2AG0117870 ... |
| Poaceae | Hordeum vulgare | 23 | HORVU.MOREX.r3.1HG0001130.1, HORVU.MOREX.r3.1HG0074060.1 ... |
| Poaceae | Lolium multiflorum | 82 | gene-QYE76_000174, gene-QYE76_000175, gene-QYE76_000212 ... |
| Poaceae | Oryza coarctata | 19 | Oco02G002900, Oco02G003120, Oco03G010420, Oco03G010440 ... |
| Poaceae | Oryza sativa | 26 | LOC_Os01g07640.1, LOC_Os01g07980.1, LOC_Os01g08000.2 ... |
| Poaceae | Paspalum vaginatum | 16 | gene-BS78_01G125500, gene-BS78_01G125600, gene-BS78_K147400 ... |
| Poaceae | Puccinellia tenuiflora | 62 | Pt_Chr0100997, Pt_Chr0102045, Pt_Chr0103021, Pt_Chr0103022 ... |
| Poaceae | Sporobolus alterniflorus | 37 | Chr01G008300, Chr01G009560, Chr01G014200, Chr02G015620 ... |
| Poaceae | Thinopyrum elongatum | 45 | Tel1E01G021800, Tel1E01G087300, Tel1E01G103100 ... |
| Poaceae | Triticum dicoccoides | 83 | gene_TRIDC1AG000630, gene_TRIDC1AG004720 ... |
| Poaceae | Triticum aestivum | 137 | TraesCS1A02G009000.3, TraesCS1A02G043400.1 ... |
| Poaceae | Zea mays | 9 | Zm00001eb031110_P003, Zm00001eb032790_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-30498, nbis-gene-48843, nbis-gene-52515 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g19414, Zma_g26077, Zma_g26238 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2875, evm.TU.LG01.2876, evm.TU.LG02.1155 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02940 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1937 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3354 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-66 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13784 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005193 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12910 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16253 |
| Salicaceae | Populus euphratica | 3 | populus_peu13592, populus_peu15136, populus_peu15937 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132645306, gene-LOC132645307 |
| Solanaceae | Solanum chilense | 1 | SOLCI001390300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008320, gene-LOC107008474, gene-LOC114073919 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5986 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3479 |
| Zosteraceae | Zostera marina | 1 | Zosma05g01570.v3.1 |