Basic Information
Locus ID:
Pt_Chr0704232
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 125016007 | 125021136 | + | Pt_Chr0704232 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 54,977.47 Da | 54.81 | 67.31 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 122 | 174 | 1.73622E-29 | - |
| Pfam | PF12315 | Protein DA1 | 271 | 481 | 5.6E-98 | IPR022087 |
| Pfam | PF00412 | LIM domain | 122 | 176 | 3.4E-12 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 114 | 147 | 1.13E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 148 | 203 | 3.58E-11 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 112 | 180 | 7.9E-17 | - |
| SMART | SM00132 | lim_4 | 121 | 173 | 6.1E-16 | IPR001781 |
| SMART | SM00726 | uim | 71 | 90 | 0.0081 | IPR003903 |
| SMART | SM00726 | uim | 40 | 59 | 0.27 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 120 | 180 | 12.8404 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 71 | 90 | 10.475372 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 122 | 156 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 112 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_047047398.1 | protein DA1-related 1-like [Lolium rigidum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | I1IGT8 | LIM zinc-binding domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100839644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology