Basic Information
Locus ID:
Pt_Chr0704203
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 124129713 | 124144591 | + | Pt_Chr0704203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 106,918.38 Da | 37.88 | 82.33 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 42 | 306 | 8.83965E-151 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 322 | 413 | 4.7E-22 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 43 | 278 | 2.6E-72 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 569 | 782 | 3.6E-44 | IPR011682 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 321 | 414 | 7.85E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 427 | 957 | 3.61E-127 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 31 | 320 | 6.67E-91 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1180 | - | 443 | 567 | 2.4E-30 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 850 | 960 | 1.3E-19 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 21 | 283 | 1.4E-93 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 365 | 420 | 6.5E-23 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 284 | 364 | 8.2E-31 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 568 | 830 | 2.7E-92 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 322 | 396 | 2.4E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_047051140.1 | probable alpha-mannosidase At5g13980 [Lolium rigidum] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2CNF5 | Alpha-mannosidase OS=Brachypodium distachyon OX=15368 GN=100832076 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology