Basic Information
Locus ID:
Pt_Chr0704185
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 123845407 | 123860277 | + | Pt_Chr0704185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 111,300.49 Da | 38.47 | 83.99 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 42 | 328 | 2.53225E-144 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 344 | 436 | 2.0E-22 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 43 | 101 | 6.9E-14 | IPR000602 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 122 | 300 | 7.2E-50 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 591 | 804 | 3.8E-44 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 886 | 992 | 1.2E-10 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 31 | 342 | 2.17E-84 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 449 | 995 | 9.26E-136 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 343 | 437 | 3.92E-28 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1180 | - | 465 | 588 | 2.4E-30 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 589 | 852 | 2.5E-92 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 306 | 386 | 8.6E-31 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 21 | 305 | 1.4E-85 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 872 | 998 | 7.0E-35 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 387 | 442 | 3.1E-23 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 344 | 418 | 2.4E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_047051140.1 | probable alpha-mannosidase At5g13980 [Lolium rigidum] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2CNF5 | Alpha-mannosidase OS=Brachypodium distachyon OX=15368 GN=100832076 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology