halophFGD

Basic Information

Locus ID: Pt_Chr0704148

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: Speckle-type POZ protein-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr07	122895213	122896274	-	Pt_Chr0704148

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.50	35,949.84 Da	40.13	97.22	0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00651	BTB/POZ domain	147	258	1.6E-22	IPR000210
SUPERFAMILY	SSF49599	TRAF domain-like	14	120	1.34E-7	-
SUPERFAMILY	SSF54695	POZ domain	136	259	2.95E-30	IPR011333
Gene3D	G3DSA:1.25.40.420	-	259	324	3.9E-18	-
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	130	255	7.4E-34	IPR011333
SMART	SM00225	BTB_4	154	260	6.3E-21	IPR000210
ProSiteProfiles	PS50097	BTB domain profile.	154	219	15.990232	IPR000210

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10523 (speckle-type POZ protein)

Pathway:

ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G39760.1	BTB/POZ/MATH-domains containing protein.
RefSeq	XP_047064604.1	BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum]
Swiss-Prot	O22286	BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1
TrEMBL	J3N2T1	BTB domain-containing protein OS=Oryza brachyantha OX=4533 GN=102722248 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	1	gene-QYE76_019715
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0704148