Basic Information
Locus ID:
Pt_Chr0703985
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 117523071 | 117529443 | - | Pt_Chr0703985 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 73,253.11 Da | 49.45 | 94.17 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 275 | 317 | 2.29513E-27 | - |
| Pfam | PF04564 | U-box domain | 271 | 341 | 2.9E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 480 | 517 | 4.6E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 396 | 435 | 8.2E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 260 | 346 | 5.65E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 367 | 650 | 3.49E-48 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 484 | 650 | 8.9E-23 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 366 | 483 | 4.9E-26 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 271 | 344 | 1.5E-30 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 24 | 138 | 5.4E-7 | IPR036537 |
| SMART | SM00185 | arm_5 | 560 | 600 | 97.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 274 | 337 | 1.0E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 396 | 436 | 1.6E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 478 | 518 | 2.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 437 | 477 | 0.57 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 407 | 449 | 13.002399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 270 | 344 | 43.389923 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 671 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 363 | - | - |
| Coils | Coil | Coil | 143 | 163 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_047046911.1 | protein spotted leaf 11-like [Lolium rigidum] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | I1IHD5 | RING-type E3 ubiquitin transferase OS=Brachypodium distachyon OX=15368 GN=100840368 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology