Basic Information
Locus ID:
Pt_Chr0703884
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 114563354 | 114570876 | - | Pt_Chr0703884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 83,954.88 Da | 53.57 | 69.42 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 483 | 729 | 1.72625E-131 | - |
| CDD | cd00130 | PAS | 119 | 220 | 5.64993E-16 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 478 | 729 | 5.1E-68 | IPR001245 |
| Pfam | PF00989 | PAS fold | 111 | 218 | 3.3E-15 | IPR013767 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 108 | 217 | 2.79E-21 | IPR035965 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 446 | 728 | 3.51E-84 | IPR011009 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 120 | 225 | 1.7E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 555 | 757 | 1.0E-64 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 470 | 554 | 5.8E-30 | - |
| SMART | SM00091 | pas_2 | 110 | 176 | 3.6E-11 | IPR000014 |
| SMART | SM00220 | serkin_6 | 477 | 733 | 9.1E-56 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 109 | 220 | 9.3E-15 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 108 | 179 | 19.889387 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 477 | 732 | 43.876896 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 596 | 608 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 551 | 564 | 7.9E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 590 | 608 | 7.9E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 700 | 722 | 7.9E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 656 | 678 | 7.9E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 637 | 647 | 7.9E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 250 | - | - |
| Coils | Coil | Coil | 722 | 742 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.3 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_044949032.1 | dual specificity protein kinase shkD [Hordeum vulgare subsp. vulgare] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | F2E2Y6 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology