Basic Information
Locus ID:
Pt_Chr0703863
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 113968948 | 113973138 | - | Pt_Chr0703863 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.08 | 70,227.26 Da | 70.21 | 61.39 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 491 | 572 | 1.1E-18 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 589 | 620 | 7.1E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 491 | 573 | 6.3E-29 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 485 | - | - |
| Coils | Coil | Coil | 525 | 554 | - | - |
| Coils | Coil | Coil | 480 | 517 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_051190060.1 | uncharacterized protein LOC127303358 [Lolium perenne] | 0 |
| TrEMBL | M0YY47 | PAPA-1 domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology