Basic Information
Locus ID:
Pt_Chr0703852
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 113649932 | 113654723 | - | Pt_Chr0703852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 54,511.12 Da | 63.43 | 56.07 | -1.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 452 | 483 | 5.3E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 354 | 435 | 7.8E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 354 | 436 | 6.3E-29 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 204 | - | - |
| Coils | Coil | Coil | 343 | 380 | - | - |
| Coils | Coil | Coil | 388 | 417 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_047048487.1 | eukaryotic translation initiation factor 5B-like [Lolium rigidum] | 0 |
| TrEMBL | M0YY47 | PAPA-1 domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology