Basic Information
Locus ID:
Pt_Chr0703749
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 110594419 | 110598757 | + | Pt_Chr0703749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 37,805.65 Da | 59.54 | 58.99 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 208 | 251 | 8.2E-9 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 78 | 154 | 8.4E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 256 | 313 | 8.9E-25 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 145 | 202 | 2.48E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 74 | 143 | 4.45E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 256 | 4.24E-11 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 279 | 320 | 1.6E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 275 | 1.2E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 209 | 251 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 209 | 252 | 11.987676 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 144 | 208 | 33.23344 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 71 | 142 | 24.861828 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 337 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_047052693.1 | E3 ubiquitin-protein ligase MIEL1-like [Lolium rigidum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6Y8N6 | RING finger and CHY zinc finger domain-containing protein 1 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology