Basic Information
Locus ID:
Pt_Chr0703725
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 109817746 | 109819257 | - | Pt_Chr0703725 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 39,748.14 Da | 51.30 | 86.08 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 25 | 150 | 6.07324E-12 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 180 | 289 | 1.07824E-46 | - |
| Pfam | PF00651 | BTB/POZ domain | 183 | 292 | 5.2E-24 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 24 | 159 | 1.32E-18 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 169 | 292 | 6.67E-31 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 166 | 288 | 9.4E-36 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 292 | 360 | 5.8E-23 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 24 | 158 | 3.9E-16 | IPR008974 |
| SMART | SM00225 | BTB_4 | 191 | 293 | 1.9E-23 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 24 | 153 | 9.830738 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 191 | 255 | 17.251833 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047048614.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NTF5 | Speckle-type POZ protein-like protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology