halophFGD

Basic Information

Locus ID: Pt_Chr0703684

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr07	108451506	108453816	+	Pt_Chr0703684

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.25	59,333.10 Da	48.94	95.33	0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13516	Leucine Rich repeat	147	170	0.029	IPR001611
Pfam	PF13516	Leucine Rich repeat	437	457	0.062	IPR001611
Pfam	PF00646	F-box domain	50	86	6.5E-5	IPR001810
SUPERFAMILY	SSF52047	RNI-like	133	511	3.92E-24	-
SUPERFAMILY	SSF81383	F-box domain	51	91	7.36E-5	IPR036047
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	121	221	1.5E-13	IPR032675
Gene3D	G3DSA:1.20.1280.50	-	52	91	1.0E-7	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	224	527	1.6E-34	IPR032675
SMART	SM00367	LRR_CC_2	147	171	14.0	IPR006553
SMART	SM00367	LRR_CC_2	172	197	9.6	IPR006553
SMART	SM00367	LRR_CC_2	339	375	180.0	IPR006553
SMART	SM00367	LRR_CC_2	486	510	260.0	IPR006553
SMART	SM00367	LRR_CC_2	313	338	7.2	IPR006553
SMART	SM00367	LRR_CC_2	435	460	14.0	IPR006553
SMART	SM00367	LRR_CC_2	198	224	730.0	IPR006553
SMART	SM00367	LRR_CC_2	461	485	52.0	IPR006553
SMART	SM00367	LRR_CC_2	287	312	430.0	IPR006553
ProSiteProfiles	PS50181	F-box domain profile.	49	96	10.133335	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	1	21	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10268 (F-box and leucine-rich repeat protein 2/20)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G80570.1	RNI-like superfamily protein.
RefSeq	XP_010237221.1	F-box/LRR-repeat protein 14 [Brachypodium distachyon]
Swiss-Prot	Q3EC97	F-box/LRR-repeat protein 14 OS=Arabidopsis thaliana OX=3702 GN=FBL14 PE=2 SV=1
TrEMBL	I1II04	F-box domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100839324 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg18288
Aizoaceae	Mesembryanthemum crystallinum	1	gene_26237
Amaranthaceae	Atriplex hortensis	1	Ah010404
Amaranthaceae	Beta vulgaris	1	BVRB_9g218950
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11650, Sbi_jg46748
Amaranthaceae	Salicornia europaea	1	Seu_jg20901
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005117
Amaranthaceae	Suaeda glauca	3	Sgl56015, Sgl60659, Sgl61208
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000017343, gene:ENSEOMG00000036806 ... gene:ENSEOMG00000051267
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7BG0009060, CQ.Regalona.r1.9AG0015420
Anacardiaceae	Pistacia vera	1	pistato.v30129580
Arecaceae	Cocos nucifera	1	COCNU_11G000770
Arecaceae	Phoenix dactylifera	1	gene-LOC103723850
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.3116.V1.1
Asteraceae	Flaveria trinervia	2	Ftri16G06360, Ftri2G33928
Brassicaceae	Arabidopsis thaliana	1	AT1G80570.2
Brassicaceae	Eutrema salsugineum	1	Thhalv10018507m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g35200.v2.2
Brassicaceae	Brassica nigra	2	BniB05g048970.2N, BniB05g075600.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G0370
Casuarinaceae	Casuarina glauca	1	Cgl02G0391
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno03g09580
Dunaliellaceae	Dunaliella salina	1	Dusal.0592s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g06520
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.788
Plantaginaceae	Plantago ovata	1	Pov_00034528
Plumbaginaceae	Limonium bicolor	2	Lb0G37349, Lb0G37350
Poaceae	Echinochloa crus-galli	4	BH05.3639, BH06.1580, BH06.1747, CH06.1734
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0149230, gene-QOZ80_2AG0149240 ... gene-QOZ80_2AG0149250, gene-QOZ80_2BG0204930, gene-QOZ80_2BG0204950, gene-QOZ80_6AG0531150, gene-QOZ80_6AG0531160, gene-QOZ80_6BG0484930, gene-QOZ80_6BG0484940, gene-QOZ80_6BG0484950
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.1HG0000530.1.CDS1 ... HORVU.MOREX.r3.1HG0011110.1.CDS1, HORVU.MOREX.r3.2HG0131810.1.CDS1, HORVU.MOREX.r3.3HG0233730.1, HORVU.MOREX.r3.5HG0447300.1.CDS1, HORVU.MOREX.r3.6HG0554650.1, HORVU.MOREX.r3.6HG0625230.1.CDS1, HORVU.MOREX.r3.6HG0625260.1.CDS1
Poaceae	Lolium multiflorum	28	gene-QYE76_002132, gene-QYE76_002133, gene-QYE76_002134 ... gene-QYE76_002136, gene-QYE76_002149, gene-QYE76_002600, gene-QYE76_004682, gene-QYE76_004683, gene-QYE76_004684, gene-QYE76_004685, gene-QYE76_004688, gene-QYE76_004689, gene-QYE76_004690, gene-QYE76_004691, gene-QYE76_004692, gene-QYE76_004694, gene-QYE76_006520, gene-QYE76_016389, gene-QYE76_016392, gene-QYE76_016394, gene-QYE76_016396, gene-QYE76_018997, gene-QYE76_019002, gene-QYE76_019003, gene-QYE76_019004, gene-QYE76_026223, gene-QYE76_026225, gene-QYE76_026232
Poaceae	Oryza coarctata	4	Oco03G024410, Oco04G024890, Oco23G007550, Oco24G007120
Poaceae	Oryza sativa	11	LOC_Os02g55540.2, LOC_Os02g55550.1, LOC_Os04g30180.1 ... LOC_Os04g30200.1, LOC_Os04g30210.1, LOC_Os04g30230.1, LOC_Os04g30320.1, LOC_Os12g33210.1, LOC_Os12g33220.1, LOC_Os12g33230.1, LOC_Os12g34220.1
Poaceae	Paspalum vaginatum	4	gene-BS78_04G052400, gene-BS78_04G307800 ... gene-BS78_09G150200, gene-BS78_10G137200
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0206238, Pt_Chr0702509, Pt_Chr0702511, Pt_Chr0702512 ... Pt_Chr0702513, Pt_Chr0703683, Pt_Chr0703684
Poaceae	Sporobolus alterniflorus	5	Chr09G017500, Chr0G009290, Chr13G001670, Chr16G007170 ... Chr16G007180
Poaceae	Thinopyrum elongatum	22	Tel1E01G012900, Tel1E01G013200, Tel1E01G013600 ... Tel1E01G013900, Tel1E01G014000, Tel1E01G014100, Tel1E01G019000, Tel1E01G019100, Tel3E01G162200, Tel5E01G189700, Tel5E01G190100, Tel5E01G787200, Tel6E01G220900, Tel6E01G221000, Tel6E01G221200, Tel6E01G570600, Tel6E01G646500, Tel6E01G646600, Tel6E01G646700, Tel6E01G649000, Tel6E01G649200, Tel7E01G736400
Poaceae	Triticum dicoccoides	35	gene_TRIDC1AG000530, gene_TRIDC1AG000640 ... gene_TRIDC1AG006880, gene_TRIDC1BG000990, gene_TRIDC1BG001020, gene_TRIDC1BG001390, gene_TRIDC1BG007920, gene_TRIDC1BG007930, gene_TRIDC1BG011480, gene_TRIDC3AG011050, gene_TRIDC3BG014920, gene_TRIDC5AG014350, gene_TRIDC5AG015440, gene_TRIDC5BG009180, gene_TRIDC5BG017420, gene_TRIDC5BG067850, gene_TRIDC6AG012470, gene_TRIDC6AG012480, gene_TRIDC6AG048330, gene_TRIDC6AG054270, gene_TRIDC6AG054290, gene_TRIDC6AG054300, gene_TRIDC6AG054370, gene_TRIDC6AG054380, gene_TRIDC6AG059990, gene_TRIDC6BG017650, gene_TRIDC6BG017660, gene_TRIDC6BG056480, gene_TRIDC6BG063470, gene_TRIDC6BG063480, gene_TRIDC6BG063590, gene_TRIDC6BG063610, gene_TRIDC7AG060800, gene_TRIDC7BG053840, gene_TRIDC7BG073000
Poaceae	Triticum aestivum	63	TraesCS1A02G004900.1, TraesCS1A02G005300.1 ... TraesCS1A02G006400.1.cds1, TraesCS1A02G051100.1.cds1, TraesCS1B02G006400.1.cds1, TraesCS1B02G007200.1, TraesCS1B02G007300.1, TraesCS1B02G008600.1, TraesCS1B02G008900.1.cds1, TraesCS1B02G009300.1, TraesCS1B02G010300.1.cds1, TraesCS1B02G061600.1.cds1, TraesCS1B02G061700.1.cds1, TraesCS1B02G085600.1.cds1, TraesCS1D02G068100.1.cds1, TraesCS3A02G092200.1.cds1, TraesCS3B02G107300.1.cds1, TraesCS3D02G092100.1.cds1, TraesCS3D02G092300.1.cds1, TraesCS3D02G452200.1, TraesCS5A02G099900.1.cds1, TraesCS5A02G100200.1.cds1, TraesCS5B02G055100.1.cds1, TraesCS5B02G105300.1.cds1, TraesCS5B02G444900.1.cds1, TraesCS5D02G060800.1.cds1, TraesCS5D02G112400.1.cds1, TraesCS5D02G112700.1.cds1, TraesCS5D02G510400.1.cds1, TraesCS6A02G096700.1.cds1, TraesCS6A02G096800.1.cds1, TraesCS6A02G096900.1.cds1, TraesCS6A02G322100.1.cds1, TraesCS6A02G362800.1.cds1, TraesCS6A02G363000.2.cds1, TraesCS6A02G363600.1.cds1, TraesCS6A02G363700.1.cds1, TraesCS6A02G363800.1.cds1, TraesCS6A02G409900.1.cds1, TraesCS6B02G125100.1.cds1, TraesCS6B02G125200.1.cds1, TraesCS6B02G125400.1.cds1, TraesCS6B02G396400.1, TraesCS6B02G396500.1.cds1, TraesCS6B02G396600.1.cds1, TraesCS6B02G398400.1.cds1, TraesCS6D02G085500.1, TraesCS6D02G085600.1.cds1, TraesCS6D02G085700.1.cds1, TraesCS6D02G085800.1.cds1, TraesCS6D02G085900.1.cds1, TraesCS6D02G086000.1, TraesCS6D02G087800.1.cds1, TraesCS6D02G301900.1.cds1, TraesCS6D02G346000.1.cds1, TraesCS6D02G346100.1.cds1, TraesCS6D02G346200.1.cds1, TraesCS6D02G347100.1.cds1, TraesCS6D02G347200.1.cds1, TraesCS6D02G347300.1.cds1, TraesCS7A02G437300.1.cds1, TraesCS7B02G336300.1.cds1, TraesCS7D02G427200.1.cds1
Poaceae	Zea mays	1	Zm00001eb258000_P001
Poaceae	Zoysia japonica	1	nbis-gene-39907
Poaceae	Zoysia macrostachya	1	Zma_g17341
Portulacaceae	Portulaca oleracea	2	evm.TU.LG08.975, evm.TU.LG22.96
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g23870
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_11_RagTag.189
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-14259
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-10047
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-14385
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000005l.113
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-16905
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-19039
Salicaceae	Populus euphratica	4	populus_peu01396, populus_peu24213, populus_peu24567 ... populus_peu38091
Solanaceae	Lycium barbarum	2	gene-LOC132630514, gene-LOC132630515
Solanaceae	Solanum chilense	1	SOLCI005692300
Solanaceae	Solanum pennellii	1	gene-LOC107029388
Tamaricaceae	Reaumuria soongarica	1	STRG.19295_chr07_-
Tamaricaceae	Tamarix chinensis	1	TC08G2289
Zosteraceae	Zostera marina	1	Zosma01g04140.v3.1