Basic Information
Locus ID:
Pt_Chr0703507
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 102256816 | 102262261 | - | Pt_Chr0703507 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 95,255.08 Da | 55.97 | 80.58 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 811 | 859 | 2.0E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 808 | 860 | 1.06E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 803 | 863 | 5.5E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 814 | 853 | 3.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 814 | 854 | 10.704165 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 375 | - | - |
| Coils | Coil | Coil | 677 | 711 | - | - |
| Coils | Coil | Coil | 748 | 775 | - | - |
| Coils | Coil | Coil | 726 | 746 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03365.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051185462.1 | putative E3 ubiquitin-protein ligase RF4 [Lolium perenne] | 0 |
| Q9ZVT8 | Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana OX=3702 GN=RF4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2DR55 | RING-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g52730v3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0679s00005.v1.0 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.879, BH03.1007, CH03.1169 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8AG0634630 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002218 |
| Poaceae | Oryza coarctata | 2 | Oco13G005350, Oco14G006640 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G079300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703507 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G006820, Chr28G006320 |
| Poaceae | Zea mays | 1 | Zm00001eb094680_P002 |