Basic Information
Locus ID:
Pt_Chr0703499
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 102002921 | 102017406 | + | Pt_Chr0703499 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 117,997.99 Da | 46.07 | 79.69 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 188 | 516 | 5.30462E-167 | - |
| CDD | cd00121 | MATH | 56 | 163 | 8.93429E-31 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 575 | 823 | 8.2E-72 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 833 | 931 | 9.5E-23 | IPR029346 |
| Pfam | PF00917 | MATH domain | 57 | 172 | 6.0E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 190 | 511 | 2.4E-46 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 185 | 541 | 3.34E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 58 | 178 | 1.21E-34 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 187 | 515 | 2.0E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 749 | 846 | 1.9E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 635 | 748 | 1.8E-39 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 52 | 186 | 2.0E-45 | IPR008974 |
| SMART | SM00061 | math_3 | 47 | 151 | 4.1E-14 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 190 | 514 | 40.217712 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 45 | 170 | 29.570393 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 191 | 206 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 430 | 447 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| Coils | Coil | Coil | 530 | 550 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_047067623.1 | ubiquitin C-terminal hydrolase 12-like isoform X3 [Lolium rigidum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6LIR0 | ubiquitinyl hydrolase 1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology