halophFGD

Basic Information

Locus ID: Pt_Chr0703163

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: PHD zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr07	81451735	81467152	-	Pt_Chr0703163

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.10	299,430.59 Da	53.47	70.85	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd15532	PHD2_CHD_II	1386	1427	2.15047E-15	-
CDD	cd15489	PHD_SF	2175	2222	0.0072992	-
Pfam	PF02791	DDT domain	1171	1227	2.6E-12	IPR018501
Pfam	PF15612	WSTF, HB1, Itc1p, MBD9 motif 1	1286	1317	2.6E-4	IPR028942
Pfam	PF00628	PHD-finger	1386	1428	2.3E-7	IPR019787
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	128	184	6.58E-11	IPR011011
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	2394	2447	5.96E-10	IPR011011
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	1375	1429	1.11E-14	IPR011011
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	2385	2457	4.6E-12	IPR013083
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1378	1443	2.8E-14	IPR013083
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	121	193	1.5E-13	IPR013083
SMART	SM00571	testlast3	1170	1230	6.8E-14	IPR018501
SMART	SM00249	PHD_3	132	180	1.1	IPR001965
SMART	SM00249	PHD_3	2690	2737	3.1	IPR001965
SMART	SM00249	PHD_3	2395	2443	3.3	IPR001965
SMART	SM00249	PHD_3	2174	2223	3.4	IPR001965
SMART	SM00249	PHD_3	1385	1428	3.7E-9	IPR001965
ProSiteProfiles	PS50016	Zinc finger PHD-type profile.	1383	1430	9.614599	IPR019787
ProSiteProfiles	PS50827	DDT domain profile.	1170	1230	15.573361	IPR018501
ProSitePatterns	PS01359	Zinc finger PHD-type signature.	1386	1427	-	IPR019786
MobiDBLite	mobidb-lite	consensus disorder prediction	570	584	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	2453	2478	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	568	605	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	82	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	209	231	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	639	714	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1117	1144	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	2464	2478	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1114	1148	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT5G22760.1	PHD finger family protein.
RefSeq	XP_047049350.1	DDT domain-containing protein PTM-like [Lolium rigidum]
Swiss-Prot	F4JYC8	DDT domain-containing protein PTM OS=Arabidopsis thaliana OX=3702 GN=PTM PE=1 SV=1
TrEMBL	M0WU28	DDT domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16345, jg8187, jg8191, jg8534
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11602, gene_21235
Amaranthaceae	Atriplex hortensis	2	Ah005047, Ah011493
Amaranthaceae	Beta vulgaris	2	BVRB_4g073390, BVRB_9g210880
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11906, Sbi_jg17859, Sbi_jg46853, Sbi_jg62483
Amaranthaceae	Salicornia europaea	2	Seu_jg1060, Seu_jg21148
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007175, GOSA_00009474
Amaranthaceae	Suaeda glauca	4	Sgl59177, Sgl80325, Sgl82788, Sgl82794
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000019528, gene:ENSEOMG00000027405 ... gene:ENSEOMG00000037801, gene:ENSEOMG00000037951, gene:ENSEOMG00000038251, gene:ENSEOMG00000044184, gene:ENSEOMG00000052957
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4BG0002060, CQ.Regalona.r1.9AG0010610 ... CQ.Regalona.r1.9AG0010620, CQ.Regalona.r1.9BG0011820
Anacardiaceae	Pistacia vera	2	pistato.v30051350, pistato.v30057270
Apiaceae	Apium graveolens	5	Ag11G04354, Ag2G01027, Ag5G01215, Ag5G02730, Ag6G02295
Arecaceae	Cocos nucifera	2	scaffold005364G000020, scaffold029272G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103696328, gene-LOC103705599, gene-LOC103723835
Asteraceae	Flaveria trinervia	3	Ftri11G03128, Ftri12G12319, Ftri13G15123
Brassicaceae	Arabidopsis thaliana	3	AT5G12400.1, AT5G22760.1, AT5G35210.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012427m.g.v1.0, Thhalv10012428m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp5g16400.v2.2, Sp6g22660.v2.2, Sp6g31240.v2.2
Brassicaceae	Brassica nigra	5	BniB02g049720.2N, BniB05g025410.2N, BniB05g041460.2N ... BniB08g005920.2N, BniB08g011370.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq05G1663, Ceq05G1715
Casuarinaceae	Casuarina glauca	2	Cgl05G1656, Cgl05G1717
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno03g13560
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g16540, gene.Thate05g01030
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG09.171, evm.TU.LG09.774
Plantaginaceae	Plantago ovata	4	Pov_00006627, Pov_00012500, Pov_00024373, Pov_00026488
Plumbaginaceae	Limonium bicolor	2	Lb3G15682, Lb3G19930
Poaceae	Echinochloa crus-galli	14	AH01.1528, AH01.1529, AH03.3973, AH04.196, AH04.274 ... AH05.185, BH01.1730, BH03.4290, BH04.262, BH05.213, CH01.1805, CH04.283, CH05.270, CH07.220
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_5AG0381300, gene-QOZ80_7AG0580400 ... gene-QOZ80_7BG0611570
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0116410.1, HORVU.MOREX.r3.4HG0355590.1 ... HORVU.MOREX.r3.5HG0459450.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003146, gene-QYE76_039040, gene-QYE76_065275
Poaceae	Oryza coarctata	4	Oco13G014960, Oco14G015810, Oco21G001060, Oco22G001890
Poaceae	Oryza sativa	2	LOC_Os07g46690.1, LOC_Os11g05130.1
Poaceae	Paspalum vaginatum	5	gene-BS78_02G093300, gene-BS78_02G379700 ... gene-BS78_05G047200, gene-BS78_08G022300, gene-BS78_08G022400
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0103659, Pt_Chr0103676, Pt_Chr0305094, Pt_Chr0305146 ... Pt_Chr0703124, Pt_Chr0703163
Poaceae	Sporobolus alterniflorus	11	Chr04G022060, Chr04G022070, Chr04G022080, Chr06G023790 ... Chr07G021400, Chr0G020970, Chr0G021340, Chr16G009270, Chr17G008330, Chr24G013160, Chr31G000920
Poaceae	Thinopyrum elongatum	4	Tel2E01G264700, Tel4E01G208000, Tel5E01G236500 ... Tel6E01G129700
Poaceae	Triticum dicoccoides	7	gene_TRIDC2AG015620, gene_TRIDC2BG018780 ... gene_TRIDC4AG029580, gene_TRIDC4BG020830, gene_TRIDC5AG022870, gene_TRIDC5BG023130, gene_TRIDC7BG048480
Poaceae	Triticum aestivum	9	TraesCS2A02G126900.1, TraesCS2B02G148800.1 ... TraesCS2D02G129400.1, TraesCS4A02G184500.1, TraesCS4B02G134200.1, TraesCS4D02G129100.1, TraesCS5A02G130800.2, TraesCS5B02G130700.3, TraesCS5D02G138300.2
Poaceae	Zea mays	4	Zm00001eb092810_P002, Zm00001eb214600_P001 ... Zm00001eb329910_P001, Zm00001eb406520_P001
Poaceae	Zoysia japonica	3	nbis-gene-167, nbis-gene-25663, nbis-gene-33183
Poaceae	Zoysia macrostachya	3	Zma_g24727, Zma_g5726, Zma_g7016
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1060, evm.TU.LG11.463, evm.TU.LG18.1709 ... evm.TU.LG20.178
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g33260, gene.Posoc05g23110
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_13_RagTag.1011 ... evm.TU.Scaffold_13_RagTag.449
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-30004, nbisL1-mrna-30674
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-3519, nbisL1-mrna-4825
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-16375, nbisL1-mrna-22078
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000015l.256, evm.TU.utg000015l.605
Rhizophoraceae	Kandelia obovata	2	Maker00015617, Maker00015887
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-4141, nbisL1-mrna-4508
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-20784, nbisL1-mrna-22182
Salicaceae	Populus euphratica	5	populus_peu01969, populus_peu08552, populus_peu35835 ... populus_peu35836, populus_peu36785
Solanaceae	Lycium barbarum	3	gene-LOC132600516, gene-LOC132604445, gene-LOC132643627
Solanaceae	Solanum chilense	2	SOLCI001772100, SOLCI002623400
Solanaceae	Solanum pennellii	3	gene-LOC107004581, gene-LOC107004681, gene-LOC107023253
Tamaricaceae	Reaumuria soongarica	2	gene_7401, gene_8603
Tamaricaceae	Tamarix chinensis	2	TC03G1863, TC07G1486
Zosteraceae	Zostera marina	1	Zosma04g20720.v3.1