Basic Information
Locus ID:
Pt_Chr0703132
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 79895888 | 79896340 | + | Pt_Chr0703132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.42 | 16,454.06 Da | 53.57 | 83.33 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006663210.1 | E3 ubiquitin-protein ligase RING1-like [Oryza brachyantha] | 0 |
| TrEMBL | A0A8T0TS73 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG014900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13038 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9036 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003020, gene-QYE76_003021, gene-QYE76_003134 ... |
| Poaceae | Oryza coarctata | 1 | Oco22G001950 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g05200.1, LOC_Os11g05230.1, LOC_Os12g05280.1 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0703130, Pt_Chr0703132, Pt_Chr0703180 |
| Poaceae | Zea mays | 4 | Zm00001eb196720_P001, Zm00001eb196750_P001 ... |