Basic Information
Locus ID:
Pt_Chr0703130
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 79838326 | 79838835 | + | Pt_Chr0703130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 18,789.65 Da | 66.61 | 69.23 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 110 | 153 | 5.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 109 | 158 | 1.32E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 159 | 7.1E-18 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 110 | 153 | 10.18781 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 56 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09560.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_051185848.1 | uncharacterized protein LOC127299851 [Lolium perenne] | 0 |
| Q0WPW5 | Receptor homology region, transmembrane domain- and RING domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=RMR4 PE=2 SV=1 | 0 | |
| TrEMBL | I1IUF2 | RING-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=104585194 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13038 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9036 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003020, gene-QYE76_003021, gene-QYE76_003134 ... |
| Poaceae | Oryza coarctata | 1 | Oco22G001950 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g05200.1, LOC_Os11g05230.1, LOC_Os12g05280.1 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0703130, Pt_Chr0703132, Pt_Chr0703180 |
| Poaceae | Zea mays | 4 | Zm00001eb196720_P001, Zm00001eb196750_P001 ... |