Basic Information
Locus ID:
Pt_Chr0702945
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Nse1 non-SMC component of SMC5-6 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 72856544 | 72859446 | + | Pt_Chr0702945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 36,746.64 Da | 62.05 | 71.16 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16493 | RING-CH-C4HC3_NSE1 | 199 | 243 | 1.60234E-17 | IPR014857 |
| Pfam | PF07574 | Nse1 non-SMC component of SMC5-6 complex | 8 | 188 | 3.0E-43 | IPR011513 |
| Pfam | PF08746 | RING-like domain | 200 | 243 | 5.5E-9 | IPR014857 |
| Gene3D | G3DSA:3.90.1150.220 | - | 5 | 82 | 3.8E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 255 | 2.7E-12 | IPR013083 |
| Gene3D | G3DSA:1.10.10.10 | - | 84 | 196 | 4.0E-18 | IPR036388 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 328 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G21140.1 | embryo defective 1379. | 0 |
| RefSeq | XP_051186011.1 | uncharacterized protein LOC127299986 [Lolium perenne] | 0 |
| TrEMBL | A0A8R7UFW4 | Non-structural maintenance of chromosomes element 1 homolog OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16252 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027808 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_1g012780, BVRB_7g171820, BVRB_8g192360 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1520, Sbi_jg35030 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3225 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003397, GOSA_00003398 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72657, Sgl76195 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000039131 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0001030 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30055010 |
| Apiaceae | Apium graveolens | 2 | Ag5G02663, Ag6G02060 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G005720 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709052 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1305.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G28818 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G21140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013965m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23380.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g041740.2N, BniB02g041750.2N, BniB05g042350.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0284, Ceq03G1016 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0330, Cgl03G1101 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g12430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0049s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07020 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015086, Pov_00017854 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19233 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.187, AH07.8, BH04.157, BH05.101, CH04.53, CH05.163 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0131150, gene-QOZ80_5AG0379910 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0463020.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003454 |
| Poaceae | Oryza coarctata | 4 | Oco21G000290, Oco22G001030, Oco23G001060, Oco24G000380 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g03590.1, LOC_Os12g03360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G029600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702945, Pt_Chr0703063 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G021430, Chr06G023010, Chr15G018630, Chr16G008810 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G248500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG023770, gene_TRIDC5BG024940 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G141300.1, TraesCS5B02G139600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb199750_P001, Zm00001eb405340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26996 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18371 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2043, evm.TU.LG14.344 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g28870, gene.Posoc02g06480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.597 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30471 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11217 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15981 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.326 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015673 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4245 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15196 |
| Salicaceae | Populus euphratica | 1 | populus_peu08507 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626023 |
| Solanaceae | Solanum chilense | 1 | SOLCI004431100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015425 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6235 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1530 |
| Zosteraceae | Zostera marina | 1 | Zosma03g30230.v3.1 |