Basic Information
Locus ID:
Pt_Chr0702633
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 61919377 | 61929782 | - | Pt_Chr0702633 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 187,020.02 Da | 50.25 | 101.01 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18052 | Rx N-terminal domain | 5 | 82 | 1.6E-6 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 162 | 389 | 4.7E-29 | IPR002182 |
| Pfam | PF00560 | Leucine Rich Repeat | 812 | 834 | 0.076 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1342 | 1618 | 9.8E-39 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1311 | 1620 | 7.22E-70 | IPR011009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 158 | 427 | 3.08E-49 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 499 | 862 | 5.1E-53 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 782 | 1151 | 1.05E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1424 | 1643 | 1.3E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1310 | 1423 | 5.0E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 787 | 918 | 1.0E-9 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 409 | 510 | 6.3E-6 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 150 | 319 | 1.3E-24 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 4 | 119 | 2.4E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 919 | 1217 | 6.1E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 543 | 786 | 5.2E-57 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1338 | 1622 | 34.760464 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1344 | 1375 | - | IPR017441 |
| PRINTS | PR00364 | Disease resistance protein signature | 266 | 280 | 3.8E-10 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 690 | 706 | 3.8E-10 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 362 | 376 | 3.8E-10 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 182 | 197 | 3.8E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1627 | 1656 | - | - |
| Coils | Coil | Coil | 32 | 52 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28930.3 | protein kinase 1B. | 0 |
| RefSeq | XP_047078841.1 | putative disease resistance RPP13-like protein 1 [Lolium rigidum] | 0 |
| P46573 | Probable serine/threonine-protein kinase PBL10 OS=Arabidopsis thaliana OX=3702 GN=PBL10 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0Q3LBJ7 | Protein kinase domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100836991 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH03.1775, CH03.1930 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0485990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0473950.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004556, gene-QYE76_017737 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g15850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K051400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702607, Pt_Chr0702633 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G312800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030020, gene_TRIDC5BG031660 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G184900.1, TraesCS5B02G182900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb310060_P001 |