Basic Information
Locus ID:
Pt_Chr0702623
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 61535759 | 61539807 | + | Pt_Chr0702623 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 86,577.36 Da | 54.25 | 84.19 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 17 | 53 | 2.0E-7 | IPR001810 |
| Pfam | PF12937 | F-box-like | 397 | 436 | 8.7E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 70 | 1.11E-12 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 392 | 445 | 1.96E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 55 | 7.4E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 393 | 439 | 3.2E-6 | - |
| SMART | SM00256 | fbox_2 | 19 | 60 | 8.2E-7 | IPR001810 |
| SMART | SM00256 | fbox_2 | 398 | 439 | 2.1E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 63 | 10.053852 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051186774.1 | uncharacterized protein LOC127300662 isoform X2 [Lolium perenne] | 0 |
| TrEMBL | A0A3B6LL74 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_007694 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702623, Pt_Chr0702647 |