Basic Information
Locus ID:
Pt_Chr0702590
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 60269701 | 60274554 | + | Pt_Chr0702590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 35,978.80 Da | 46.99 | 85.92 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 157 | 268 | 6.8E-24 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 148 | 268 | 4.32E-30 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 141 | 271 | 5.7E-34 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 272 | 328 | 1.2E-13 | - |
| SMART | SM00225 | BTB_4 | 164 | 270 | 5.2E-21 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 164 | 231 | 16.879559 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047051357.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2CQV1 | BTB domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100841263 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.1627, CH03.1944 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0532640, gene-QOZ80_6BG0486160 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0474200.1.CDS1 |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_004664, gene-QYE76_004665, gene-QYE76_004666 ... |
| Poaceae | Oryza coarctata | 2 | Oco17G002920, Oco17G002940 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g16850.1, LOC_Os09g16870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G194800 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0203193, Pt_Chr0500236, Pt_Chr0702590, Pt_Chr0702591 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G314700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG030150 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G186100.1.cds1, TraesCS5B02G184200.1.cds1 ... |