Basic Information
Locus ID:
Pt_Chr0702564
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 59420394 | 59424327 | - | Pt_Chr0702564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 52,492.75 Da | 53.01 | 75.63 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 160 | 449 | 5.3183E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 326 | 364 | 0.0063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 414 | 449 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 275 | 310 | 6.2E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 195 | 252 | 4.8E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 166 | 449 | 8.55E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 101 | 452 | 5.2E-114 | IPR015943 |
| SMART | SM00320 | WD40_4 | 271 | 310 | 7.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 449 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 187 | 226 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 267 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 322 | 364 | 0.002 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 417 | 450 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 278 | 319 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 278 | 310 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 417 | 450 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 194 | 235 | 11.009724 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 436 | 450 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_047050930.1 | cell division cycle 20.2, cofactor of APC complex-like [Lolium rigidum] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LJT5 | ANAPC4_WD40 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology