Basic Information
Locus ID:
Pt_Chr0702563
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
acetyltransferase type B catalytic subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr07 | 59407882 | 59412428 | - | Pt_Chr0702563 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 48,477.21 Da | 48.23 | 92.61 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 195 | 253 | 9.94997E-6 | - |
| Pfam | PF10394 | Histone acetyl transferase HAT1 N-terminus | 31 | 78 | 1.3E-6 | IPR019467 |
| Pfam | PF00583 | Acetyltransferase (GNAT) family | 195 | 250 | 1.1E-5 | IPR000182 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 28 | 334 | 1.69E-56 | IPR016181 |
| Gene3D | G3DSA:3.90.360.10 | - | 30 | 79 | 1.1E-5 | IPR037113 |
| Gene3D | G3DSA:3.40.630.30 | - | 137 | 264 | 3.8E-32 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56740.1 | histone acetyltransferase of the GNAT family 2. Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of lysine 12 of histone H4 reduces radioactive acetylation by HAG2. HAG2 acetylates histone H4 lysine 12. | 0 |
| RefSeq | XP_051186910.1 | probable histone acetyltransferase type B catalytic subunit [Lolium perenne] | 0 |
| Q6ES10 | Probable histone acetyltransferase type B catalytic subunit OS=Oryza sativa subsp. japonica OX=39947 GN=HATB PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6KI35 | histone acetyltransferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15450 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5316 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029125 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g166250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1409, Sbi_jg35163 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3328 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003505 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73752, Sgl77254 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006127, gene:ENSEOMG00000037094 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7BG0013420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30257820 |
| Apiaceae | Apium graveolens | 1 | Ag10G01476 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714338 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2666.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G02615 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G56740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g18490.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g035740.2N, BniB08g014340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0900 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0931 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g05800 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g16930 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1191 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039657 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17043 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1669, BH03.1817, CH03.1985 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0533000 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0474550.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004628 |
| Poaceae | Oryza coarctata | 2 | Oco17G003080, Oco18G002970 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g17850.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G159400, gene-BS78_05G064500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702543, Pt_Chr0702563 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G011670, Chr11G010650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G316900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030490, gene_TRIDC5BG032080 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G197700.1, TraesCS5B02G186000.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb054310_P001, Zm00001eb171070_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19864 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32536 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.971, evm.TU.LG12.769 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g12280 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1861 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25722 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5098 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4644 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1059 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000959 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14825 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1154 |
| Salicaceae | Populus euphratica | 1 | populus_peu16169 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608961 |
| Solanaceae | Solanum chilense | 1 | SOLCI005700400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011142 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3977_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1335 |
| Zosteraceae | Zostera marina | 2 | Zosma01g22860.v3.1, Zosma06g24640.v3.1 |